Databases available: (Last updated August 10th, 2006) 1_maizearray_oligo_57452_fasta The set of designed 70-mer maize array oligos synthesized by Qiagen. 2_remapping_version1_57452_fasta (Remapping version 1) The current array with version 1 annotation. 3_remapping_version2_57452_fasta (Remapping version 2) The current array with version 2 annotation. 4_remapping_version3_57452_fasta (Remapping version 3) The current array with version 3 annotation. 5_remapping_version4_57452_fasta (Remapping version 4) The current array with version 4 annotation. All_fasta (Current maize array sequences/genes) The set of sequences/genes from the currect maize array oligo design that have been synthesized by Qiagen. maize_oligo_array_oriented_fasta The set of original sequences for which the orientation can be determined, so that all oligos designed from these sequences can be assumed to be positive stranded. maize_oligo_array_unoriented_forward_fasta The set of original sequences for which the orientation CAN NOT be decided, resulting in designed oligo sequences with unknown orientation.
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From       To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
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