Choose program to use and database to search:

Databases available:

(Last updated August 10th, 2006)

1_maizearray_oligo_57452_fasta
    The set of designed 70-mer maize array oligos synthesized by Qiagen.

2_remapping_version1_57452_fasta (Remapping version 1)
    The current array with version 1 annotation.

3_remapping_version2_57452_fasta (Remapping version 2)
    The current array with version 2 annotation.

4_remapping_version3_57452_fasta (Remapping version 3)
    The current array with version 3 annotation.

5_remapping_version4_57452_fasta (Remapping version 4)
    The current array with version 4 annotation.

All_fasta (Current maize array sequences/genes)
    The set of sequences/genes from the currect maize array oligo design that have been synthesized by Qiagen.

maize_oligo_array_oriented_fasta
    The set of original sequences for which the orientation can be determined, so that all oligos designed from these sequences can be assumed to be positive stranded.

maize_oligo_array_unoriented_forward_fasta
    The set of original sequences for which the orientation CAN NOT be decided, resulting in designed oligo sequences with unknown orientation.
Program Database

Enter sequence below in FASTA format

Or load it from disk

Set subsequence: From         To


The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Other advanced options:     


Graphical Overview    Alignment view
Descriptions    Alignments Color schema


Comments and suggestions to:< blast-help@ncbi.nlm.nih.gov >

Last modified: Jan 11, 2002